PoplarV1, Main, Exploration, bibRecord, 002207

Genome-wide identification and characterization of R2R3MYB family in Solanum lycopersicum.

Identifieur interne : 002207 ( Main/Exploration ); précédent : 002206; suivant : 002208

Genome-wide identification and characterization of R2R3MYB family in Solanum lycopersicum.

Auteurs : Panpan Zhao [République populaire de Chine] ; Qiang Li ; Jing Li ; Lina Wang ; Zhonghai Ren

Source :

Molecular genetics and genomics : MGG [ 1617-4623 ] ; 2014.

RBID : pubmed:25005853

Descripteurs français

KwdFr :
- Duplication de gène (MeSH), Exons (MeSH), Expression des gènes (MeSH), Facteurs de transcription (classification), Facteurs de transcription (génétique), Facteurs de transcription (métabolisme), Famille multigénique (MeSH), Génome végétal (MeSH), Introns (MeSH), Lycopersicon esculentum (génétique), Phylogenèse (MeSH), Protéines végétales (classification), Protéines végétales (génétique), Protéines végétales (métabolisme), Séquence conservée (MeSH), Séquence nucléotidique (MeSH).
MESH :
- classification : Facteurs de transcription, Protéines végétales.
- génétique : Facteurs de transcription, Lycopersicon esculentum, Protéines végétales.
- métabolisme : Facteurs de transcription, Protéines végétales.
- Duplication de gène, Exons, Expression des gènes, Famille multigénique, Génome végétal, Introns, Phylogenèse, Séquence conservée, Séquence nucléotidique.

English descriptors

KwdEn :
- Base Sequence (MeSH), Conserved Sequence (MeSH), Exons (MeSH), Gene Duplication (MeSH), Gene Expression (MeSH), Genome, Plant (MeSH), Introns (MeSH), Lycopersicon esculentum (genetics), Multigene Family (MeSH), Phylogeny (MeSH), Plant Proteins (classification), Plant Proteins (genetics), Plant Proteins (metabolism), Transcription Factors (classification), Transcription Factors (genetics), Transcription Factors (metabolism).
MESH :
- chemical , classification : Plant Proteins, Transcription Factors.
- genetics : Lycopersicon esculentum, Plant Proteins, Transcription Factors.
- chemical , metabolism : Plant Proteins, Transcription Factors.
- Base Sequence, Conserved Sequence, Exons, Gene Duplication, Gene Expression, Genome, Plant, Introns, Multigene Family, Phylogeny.

Abstract

The R2R3MYB proteins comprise one of the largest families of transcription factors and play regulatory roles in developmental processes and defense responses in plants. However, there has been relatively little effort to systematically carry out comprehensive genomic and functional analyses of these genes in tomato (Solanum lycopersicum L.), a reference species for Solanaceae plants, and the model plant for fruit development. In this study, a total of 121 R2R3MYB genes were identified in the tomato genome released recently and further classified into 29 subgroups based on the phylogenetic analysis of the complete protein sequences. Phylogenetic comparison of the members of this superfamily among tomato, Arabidopsis, grape, rice, poplar, soybean, cucumber and apple revealed that the putative functions of some tomato R2R3MYB proteins were clustered into the Arabidopsis functional clades. The chromosome distribution pattern revealed that tomato R2R3MYB genes were enriched on several chromosomes and 52 % of the family members were tandemly duplicated genes. Tissue specificity or different expression levels of SlR2R3MYBs in different tissues suggested differential regulation of tissue development as well as metabolic regulation. The transcript abundance level analysis during abiotic conditions identified a group of R2R3MYB genes that responded to one or more treatments suggesting that the SlR2R3MYBs played major roles in the plant response to abiotic conditions and involved in signal transduction pathways. This study not only provides a solid foundation for further functional dissection of tomato R2R3MYB family genes, but may also be profitable for, in the future, the improvement of tomato stress tolerance and fruit quality.

DOI: 10.1007/s00438-014-0879-4
PubMed: 25005853

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 002095
to stream Main, to step Curation: 002095

Le document en format XML

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<front><div type="abstract" xml:lang="en">The R2R3MYB proteins comprise one of the largest families of transcription factors and play regulatory roles in developmental processes and defense responses in plants. However, there has been relatively little effort to systematically carry out comprehensive genomic and functional analyses of these genes in tomato (Solanum lycopersicum L.), a reference species for Solanaceae plants, and the model plant for fruit development. In this study, a total of 121 R2R3MYB genes were identified in the tomato genome released recently and further classified into 29 subgroups based on the phylogenetic analysis of the complete protein sequences. Phylogenetic comparison of the members of this superfamily among tomato, Arabidopsis, grape, rice, poplar, soybean, cucumber and apple revealed that the putative functions of some tomato R2R3MYB proteins were clustered into the Arabidopsis functional clades. The chromosome distribution pattern revealed that tomato R2R3MYB genes were enriched on several chromosomes and 52 % of the family members were tandemly duplicated genes. Tissue specificity or different expression levels of SlR2R3MYBs in different tissues suggested differential regulation of tissue development as well as metabolic regulation. The transcript abundance level analysis during abiotic conditions identified a group of R2R3MYB genes that responded to one or more treatments suggesting that the SlR2R3MYBs played major roles in the plant response to abiotic conditions and involved in signal transduction pathways. This study not only provides a solid foundation for further functional dissection of tomato R2R3MYB family genes, but may also be profitable for, in the future, the improvement of tomato stress tolerance and fruit quality.</div>
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Genome-wide identification and characterization of R2R3MYB family in Solanum lycopersicum.

Genome-wide identification and characterization of R2R3MYB family in Solanum lycopersicum.

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